covid-19 patient
Oversampling techniques for predicting COVID-19 patient length of stay
Farahany, Zachariah, Wu, Jiawei, Islam, K M Sajjadul, Madiraju, Praveen
Abstract--COVID-19 is a respiratory disease that caused a global pandemic in 2019. It is highly infectious and has the following symptoms: fever or chills, cough, shortness of breath, fatigue, muscle or body aches, headache, the new loss of taste or smell, sore throat, congestion or runny nose, nausea or vomiting, and diarrhea. These symptoms vary in severity; some people with many risk factors have been known to have lengthy hospital stays or die from the disease. In this paper, we analyze patients' electronic health records (EHR) to predict the severity of their COVID-19 infection using the length of stay (LOS) as our measurement of severity. This is an imbalanced classification problem, as many people have a shorter LOS rather than a longer one. T o combat this problem, we synthetically create alternate oversampled training data sets. Once we have this oversampled data, we run it through an Artificial Neural Network (ANN), which during training has its hyperparameters tuned by using bayesian optimization. We select the model with the best F1 score and then evaluate it and discuss it. COVID-19 is defined by the Centers for Disease Control and Prevention (CDC) as "a respiratory disease caused by SARS-CoV -2, a coronavirus discovered in 2019. The virus spreads mainly from person to person through respiratory droplets produced when an infected person coughs, sneezes, or talks" [1]. Furthermore, they add, "For people who have symptoms, illness can range from mild to severe. Adults 65 years and older and people of any age with underlying medical conditions are at higher risk for severe illness" [1].In 2019 this novel coronavirus was first detected. The highly infectious nature of this disease, combined with the respiratory nature of the infection, caused a pandemic. Along with being highly contagious, COVID-19 also has an extensive range of symptoms such as fever or chills, cough, shortness of breath, fatigue, muscle or body aches, headache, the new loss of taste or smell, sore throat, congestion or runny nose, nausea or vomiting, and diarrhea [2]. Along with a long list of symptoms, COVID-19 has many risk factors, which may increase the severity of the infection.
- North America > United States > Wisconsin > Milwaukee County > Wauwatosa (0.04)
- Europe > Montenegro > Budva > Budva (0.04)
- Asia > Middle East > Saudi Arabia > Riyadh Province > Riyadh (0.04)
- Asia > Middle East > Jordan (0.04)
- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
COVID 19 Diagnosis Analysis using Transfer Learning
Coronaviruses transmit COVID-19, a rapidly spreading disease. A Coronavirus infection (COVID-19) was first discovered in December 2019 in Wuhan, China, and spread rapidly throughout the planet in exactly some months. because of this, the virus can cause severe symptoms and even death, especially within the elderly and in people with medical conditions. The virus causes acute respiratory infections in humans. the primary case was diagnosed in China in 2019 and the pandemic started in 2020. Since the quantity of cases of COVID-19 is increasing daily, there are only a limited number of test kits available in hospitals. So, to stop COVID-19 from spreading among people, an automatic diagnosis system must be implemented. during this study, three pre-trained neural networks supported convolutional neural networks (VGG16, VGG19, ResNet50) are proposed for detecting Coronavirus pneumonia infected patients through X-rays and computerized tomography (CT). By using cross-validation, we've got implemented binary classifications with two classes (COVID-19, Normal (healthy)). Taking into consideration the results obtained, the pre-trained ResNet50 model provides the simplest classification performance (97.77% accuracy, 100% sensitivity, 93.33% specificity, 98.00% F1-score) among the opposite three used models over 6259 images.
- Asia > China > Hubei Province > Wuhan (0.24)
- Europe > United Kingdom > Scotland (0.04)
Classification of Deceased Patients from Non-Deceased Patients using Random Forest and Support Vector Machine Classifiers
Saha, Dheeman, Segura, Aaron, Tiwari, Biraj
Analyzing large datasets and summarizing it into useful information is the heart of the data mining process. In healthcare, information can be converted into knowledge about patient historical patterns and possible future trends. During the COVID-19 pandemic, data mining COVID-19 patient information poses an opportunity to discover patterns that may signal that the patient is at high risk for death. COVID-19 patients die from sepsis, a complex disease process involving multiple organ systems. We extracted the variables physicians are most concerned about regarding viral septic infections. With the aim of distinguishing COVID-19 patients who survive their hospital stay and those COVID-19 who do not, the authors of this study utilize the Support Vector Machine (SVM) and the Random Forest (RF) classification techniques to classify patients according to their demographics, laboratory test results, and preexisting health conditions. After conducting a 10-fold validation procedure, we assessed the performance of the classification through a Receiver Operating Characteristic (ROC) curve, and a Confusion Matrix was used to determine the accuracy of the classifiers. We also performed a cluster analysis on the binary factors, such as if the patient had a preexisting condition and if sepsis was identified, and the numeric values from patient demographics and laboratory test results as predictors.
CL3: A Collaborative Learning Framework for the Medical Data Ensuring Data Privacy in the Hyperconnected Environment
Parvez, Mohamamd Zavid, Islam, Rafiqul, Islam, Md Zahidul
In a hyperconnected environment, medical institutions are particularly concerned with data privacy when sharing and transmitting sensitive patient information due to the risk of data breaches, where malicious actors could intercept sensitive information. A collaborative learning framework, including transfer, federated, and incremental learning, can generate efficient, secure, and scalable models while requiring less computation, maintaining patient data privacy, and ensuring an up-to-date model. This study aims to address the detection of COVID-19 using chest X-ray images through a proposed collaborative learning framework called CL3. Initially, transfer learning is employed, leveraging knowledge from a pre-trained model as the starting global model. Local models from different medical institutes are then integrated, and a new global model is constructed to adapt to any data drift observed in the local models. Additionally, incremental learning is considered, allowing continuous adaptation to new medical data without forgetting previously learned information. Experimental results demonstrate that the CL3 framework achieved a global accuracy of 89.99% when using Xception with a batch size of 16 after being trained for six federated communication rounds. A demo of the CL3 framework is available at https://github.com/zavidparvez/CL3-Collaborative-Approach to ensure reproducibility.
- Oceania > Australia (0.15)
- Europe > Spain > Canary Islands > Gran Canaria (0.04)
- Information Technology > Security & Privacy (1.00)
- Health & Medicine > Therapeutic Area > Infections and Infectious Diseases (0.76)
- Health & Medicine > Therapeutic Area > Immunology (0.56)
- Health & Medicine > Diagnostic Medicine > Imaging (0.54)
Prognosis of COVID-19 using Artificial Intelligence: A Systematic Review and Meta-analysis
Motamedian, SaeedReza, Mohaghegh, Sadra, Oregani, Elham Babadi, Amjadi, Mahrsa, Shobeiri, Parnian, Cheraghi, Negin, Solouki, Niusha, Ahmadi, Nikoo, Mohammad-Rahimi, Hossein, Bouchareb, Yassine, Rahmim, Arman
Purpose: Artificial intelligence (AI) techniques have been extensively utilized for diagnosing and prognosis of several diseases in recent years. This study identifies, appraises and synthesizes published studies on the use of AI for the prognosis of COVID-19. Method: Electronic search was performed using Medline, Google Scholar, Scopus, Embase, Cochrane and ProQuest. Studies that examined machine learning or deep learning methods to determine the prognosis of COVID-19 using CT or chest X-ray images were included. Polled sensitivity, specificity area under the curve and diagnostic odds ratio were calculated. Result: A total of 36 articles were included; various prognosis-related issues, including disease severity, mechanical ventilation or admission to the intensive care unit and mortality, were investigated. Several AI models and architectures were employed, such as the Siamense model, support vector machine, Random Forest , eXtreme Gradient Boosting, and convolutional neural networks. The models achieved 71%, 88% and 67% sensitivity for mortality, severity assessment and need for ventilation, respectively. The specificity of 69%, 89% and 89% were reported for the aforementioned variables. Conclusion: Based on the included articles, machine learning and deep learning methods used for the prognosis of COVID-19 patients using radiomic features from CT or CXR images can help clinicians manage patients and allocate resources more effectively. These studies also demonstrate that combining patient demographic, clinical data, laboratory tests and radiomic features improves model performances.
- North America > Canada > British Columbia > Metro Vancouver Regional District > Vancouver (0.04)
- Asia > Middle East > Jordan (0.04)
- Asia > Middle East > Iran > Tehran Province > Tehran (0.04)
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- Research Report > New Finding (1.00)
- Research Report > Experimental Study (1.00)
- Health & Medicine > Therapeutic Area > Infections and Infectious Diseases (1.00)
- Health & Medicine > Therapeutic Area > Immunology (1.00)
- Health & Medicine > Epidemiology (1.00)
COVID-19: post infection implications in different age groups, mechanism, diagnosis, effective prevention, treatment, and recommendations
Raheem, Muhammad Akmal, Rahim, Muhammad Ajwad, Gul, Ijaz, Reyad-ul-Ferdous, Md., Le, Liyan, Hui, Junguo, Xia, Shuiwei, Chen, Minjiang, Yu, Dongmei, Pandey, Vijay, Qin, Peiwu, Ji, Jiansong
SARS-CoV-2, the highly contagious pathogen responsible for the COVID-19 pandemic, has persistent effects that begin four weeks after initial infection and last for an undetermined duration. These chronic effects are more harmful than acute ones. This review explores the long-term impact of the virus on various human organs, including the pulmonary, cardiovascular, neurological, reproductive, gastrointestinal, musculoskeletal, endocrine, and lymphoid systems, particularly in older adults. Regarding diagnosis, RT-PCR is the gold standard for detecting COVID-19, though it requires specialized equipment, skilled personnel, and considerable time to produce results. To address these limitations, artificial intelligence in imaging and microfluidics technologies offers promising alternatives for diagnosing COVID-19 efficiently. Pharmacological and non-pharmacological strategies are effective in mitigating the persistent impacts of COVID-19. These strategies enhance immunity in post-COVID-19 patients by reducing cytokine release syndrome, improving T cell response, and increasing the circulation of activated natural killer and CD8 T cells in blood and tissues. This, in turn, alleviates symptoms such as fever, nausea, fatigue, muscle weakness, and pain. Vaccines, including inactivated viral, live attenuated viral, protein subunit, viral vectored, mRNA, DNA, and nanoparticle vaccines, significantly reduce the adverse long-term effects of the virus. However, no vaccine has been reported to provide lifetime protection against COVID-19. Consequently, protective measures such as physical distancing, mask usage, and hand hygiene remain essential strategies. This review offers a comprehensive understanding of the persistent effects of COVID-19 on individuals of varying ages, along with insights into diagnosis, treatment, vaccination, and future preventative measures against the spread of SARS-CoV-2.
- Asia > Middle East > Israel (0.14)
- Asia > Middle East > UAE (0.14)
- Europe > Middle East > Malta (0.14)
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- Health & Medicine > Therapeutic Area > Infections and Infectious Diseases (1.00)
- Health & Medicine > Therapeutic Area > Immunology (1.00)
- Health & Medicine > Therapeutic Area > Psychiatry/Psychology > Mental Health (0.46)
- Health & Medicine > Therapeutic Area > Endocrinology > Diabetes (0.46)
Interpretable Machine Learning Enhances Disease Prognosis: Applications on COVID-19 and Onward
In response to the COVID-19 pandemic, the integration of interpretable machine learning techniques has garnered significant attention, offering transparent and understandable insights crucial for informed clinical decision making. This literature review delves into the applications of interpretable machine learning in predicting the prognosis of respiratory diseases, particularly focusing on COVID-19 and its implications for future research and clinical practice. We reviewed various machine learning models that are not only capable of incorporating existing clinical domain knowledge but also have the learning capability to explore new information from the data. These models and experiences not only aid in managing the current crisis but also hold promise for addressing future disease outbreaks. By harnessing interpretable machine learning, healthcare systems can enhance their preparedness and response capabilities, thereby improving patient outcomes and mitigating the impact of respiratory diseases in the years to come.
- North America > United States > California > Santa Cruz County > Santa Cruz (0.14)
- North America > United States > New York (0.04)
- North America > United States > Massachusetts > Suffolk County > Boston (0.04)
- North America > United States > Illinois > Cook County > Chicago (0.04)
Artificial Intelligence (AI) Based Prediction of Mortality, for COVID-19 Patients
Tamala, Mahbubunnabi, Rahmanb, Mohammad Marufur, Alhasimc, Maryam, Mulhimd, Mobarak Al, Derichee, Mohamed
For severely affected COVID-19 patients, it is crucial to identify high-risk patients and predict survival and need for intensive care (ICU). Most of the proposed models are not well reported making them less reproducible and prone to high risk of bias particularly in presence of imbalance data/class. In this study, the performances of nine machine and deep learning algorithms in combination with two widely used feature selection methods were investigated to predict last status representing mortality, ICU requirement, and ventilation days. Fivefold cross-validation was used for training and validation purposes. To minimize bias, the training and testing sets were split maintaining similar distributions. Only 10 out of 122 features were found to be useful in prediction modelling with Acute kidney injury during hospitalization feature being the most important one. The algorithms performances depend on feature numbers and data pre-processing techniques. LSTM performs the best in predicting last status and ICU requirement with 90%, 92%, 86% and 95% accuracy, sensitivity, specificity, and AUC respectively. DNN performs the best in predicting Ventilation days with 88% accuracy. Considering all the factors and limitations including absence of exact time point of clinical onset, LSTM with carefully selected features can accurately predict last status and ICU requirement. DNN performs the best in predicting Ventilation days. Appropriate machine learning algorithm with carefully selected features and balance data can accurately predict mortality, ICU requirement and ventilation support. Such model can be very useful in emergency and pandemic where prompt and precise
- Asia > Middle East > Saudi Arabia > Eastern Province > Dammam (0.04)
- North America > United States > New York > Suffolk County > Stony Brook (0.04)
- Asia > China > Hubei Province > Wuhan (0.04)
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- Research Report > Experimental Study (0.68)
- Research Report > New Finding (0.67)
Deep Neural Decision Forest: A Novel Approach for Predicting Recovery or Decease of COVID-19 Patients with Clinical and RT-PCR
Dehghani, Mohammad, Yazdanparast, Zahra, Samani, Rasoul
COVID-19 continues to be considered an endemic disease in spite of the World Health Organization's declaration that the pandemic is over. This pandemic has disrupted people's lives in unprecedented ways and caused widespread morbidity and mortality. As a result, it is important for emergency physicians to identify patients with a higher mortality risk in order to prioritize hospital equipment, especially in areas with limited medical services. The collected data from patients is beneficial to predict the outcome of COVID-19 cases, although there is a question about which data makes the most accurate predictions. Therefore, this study aims to accomplish two main objectives. First, we want to examine whether deep learning algorithms can predict a patient's morality. Second, we investigated the impact of Clinical and RT-PCR on prediction to determine which one is more reliable. We defined four stages with different feature sets and used interpretable deep learning methods to build appropriate model. Based on results, the deep neural decision forest performed the best across all stages and proved its capability to predict the recovery and death of patients. Additionally, results indicate that Clinical alone (without the use of RT-PCR) is the most effective method of diagnosis, with an accuracy of 80%. It is important to document and understand experiences from the COVID-19 pandemic in order to aid future medical efforts. This study can provide guidance for medical professionals in the event of a crisis or outbreak similar to COVID-19. Keywords: Machine Learning, Deep Learning, Deep Neural Decision Forest, COVID-19, Polymerase Chain Reaction, RT-PCR. 1. Introduction COVID-19 was first observed as a deadly illness in the Wuhan region of China in 2019. It was highly contagious and spread rapidly through direct contact with an infected individual [1].
- Asia > China > Hubei Province > Wuhan (0.24)
- North America > United States (0.14)
- Asia > Middle East > Iran > Tehran Province > Tehran (0.04)
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- Research Report > New Finding (0.94)
- Research Report > Experimental Study (0.89)
Cross-dataset domain adaptation for the classification COVID-19 using chest computed tomography images
Detecting COVID-19 patients using Computed Tomography (CT) images of the lungs is an active area of research. Datasets of CT images from COVID-19 patients are becoming available. Deep learning (DL) solutions and in particular Convolutional Neural Networks (CNN) have achieved impressive results for the classification of COVID-19 CT images, but only when the training and testing take place within the same dataset. Work on the cross-dataset problem is still limited and the achieved results are low. Our work tackles the cross-dataset problem through a Domain Adaptation (DA) technique with deep learning. Our proposed solution, COVID19-DANet, is based on pre-trained CNN backbone for feature extraction. For this task, we select the pre-trained Efficientnet-B3 CNN because it has achieved impressive classification accuracy in previous work. The backbone CNN is followed by a prototypical layer which is a concept borrowed from prototypical networks in few-shot learning (FSL). It computes a cosine distance between given samples and the class prototypes and then converts them to class probabilities using the Softmax function. To train the COVID19-DANet model, we propose a combined loss function that is composed of the standard cross-entropy loss for class discrimination and another entropy loss computed over the unlabelled target set only. This so-called unlabelled target entropy loss is minimized and maximized in an alternative fashion, to reach the two objectives of class discrimination and domain invariance. COVID19-DANet is tested under four cross-dataset scenarios using the SARS-CoV-2-CT and COVID19-CT datasets and has achieved encouraging results compared to recent work in the literature.
- Asia > China > Hubei Province > Wuhan (0.04)
- North America > United States (0.04)
- South America > Brazil > São Paulo (0.04)
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